GgaEX1004538 @ galGal4
Exon Skipping
Description
Homeobox protein Hox-A5 [Source:UniProtKB/Swiss-Prot;Acc:Q6B3N0]
Coordinates
chr2:32835932-32847388:-
Coord C1 exon
chr2:32847311-32847388
Coord A exon
chr2:32843038-32843229
Coord C2 exon
chr2:32835932-32836036
Length
192 bp
Sequences
Splice sites
3' ss Seq
AGCCTCCTGTTTCTATTCAGACA
3' ss Score
7.48
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GAGGGCGATTCGTCTCCTGTGCAGCCAAAGCGACAGCTGTCAAAGTCGCAGGGGCTCCTGCGAGCCAGAACCTAAAAG
Seq A exon
ACAAGGAAATTAGTAGCGCCTCTCCCTCCGGCAGTGGCAAGCAGAGGGGACAAGGGGACTATCTGCACTTTTCTCCCGAGCAACAATACAAATCTAACGGCGTGCAAAGCAAAATCGTGAATGACGAAGGCACCGACCGGAAGTACACGAGCCCTGTTTACCCCTGGATGCAGCGGATGAACTCCTGTGCCG
Seq C2 exon
GCTACGTGTGCCTCCTGGCCATTCACATTGTCACTTTTAGGTACAGAAGTATCCAAACCACAAGTTCTCAATACTGTGTGAAAAAATGGCTCCCTGCAAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025929_MULTIEX1-1/3=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCGATTCGTCTCCTGT
R:
CGACTTGCAGGGAGCCATTTT
Band lengths:
181-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]