HsaEX7004101 @ hg38
Exon Skipping
Gene
ENSG00000106006 | HOXA6
Description
homeobox A6 [Source:HGNC Symbol;Acc:HGNC:5107]
Coordinates
chr7:27145396-27150603:-
Coord C1 exon
chr7:27150308-27150603
Coord A exon
chr7:27147308-27147569
Coord C2 exon
chr7:27145396-27145917
Length
262 bp
Sequences
Splice sites
3' ss Seq
CACCTTGTTTCTACCAACAGTCC
3' ss Score
8.77
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GTAGTCCTGAGGCCTGTAGGCCTGGCTGCTCTGAGGAGGATTGGCTATGGCAAAGAAGGACGGCTTTGGCTCCAGGAGAGGGCTGTGAAGGGCAGAGGCCGCACCTGTGTGCTTTGGGCTCTGGTCTGGGCTAGCGAGCTGGCTGGACCGAGGTGGCCTTCAAGGTCCCACACCTACATACTCCCAGACCACCCTCCAGGCTGGCAGAGGTGGAGCTGTTCAATGGGCAGCCCAGGGCAAGGGCAGACAGTGGGGCCCAGCTCGCCGTCCTGCCCCCCTTGGAGAGAAACTGAAAG
Seq A exon
TCCAACTCGGTCCTGGCCTGCAACCGGGCGTCCTACGAGTACGGGGCCTCGTGTTTCTATTCTGATAAGGACCTCAGTGGCGCCTCGCCCTCGGGCAGTGGCAAGCAGAGGGGCCCCGGGGACTACCTGCACTTTTCTCCCGAGCAGCAGTACAAACCCGACAGCAGCAGCGGGCAGGGCAAAGCACTCCATGACGAAGGCGCCGACCGGAAGTACACGAGCCCGGTTTACCCTTGGATGCAGCGGATGAACTCCTGCGCGG
Seq C2 exon
GTGCTGTGTATGGGAGCCATGGGCGCCGAGGCCGCCAGACCTACACGCGCTACCAGACACTGGAGCTGGAGAAGGAGTTCCACTTCAACCGCTACCTGACACGGCGCCGCCGCATCGAGATCGCCAACGCGCTCTGCCTCACCGAGCGCCAGATCAAGATCTGGTTCCAGAACCGCCGCATGAAGTGGAAAAAGGAAAACAAGCTCATCAATTCCACGCAGCCCAGCGGGGAGGACTCAGAGGCAAAGGCGGGCGAGTAGATGCCTGGGCAGGGACCAGGCCAGCGCTGCAACCTCCTTCGGCTTTGCCCCCTTGCCCTCGCCTGTTCCCCAACTTTTCTCCCCGCCTGCTCCCATCTGGGGGCTTCCGCAGCTTCAGGGGAGCCCGGAGCTTTGCAAGCGTCTGTGCATTTATTTCTTACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACCTCACACACAGCCAATACCAGCGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106006-'2-4,'2-1,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.264 C2=0.279
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=WD(100=65.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCTGAGGAGGATTGGCT
R:
CATGGCTCCCATACACAGCAC
Band lengths:
292-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains