GgaEX1004808 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GFI8]
Coordinates
chr21:6522490-6524183:-
Coord C1 exon
chr21:6524047-6524183
Coord A exon
chr21:6522721-6522866
Coord C2 exon
chr21:6522490-6522642
Length
146 bp
Sequences
Splice sites
3' ss Seq
AACACCCCCCCTACTGCCAGCGG
3' ss Score
5.46
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GAATGACATCGCCCTGCTGAAACTGCGGCGCAATGCTGTGCTCAACGACTACGTGCAGACAGGGCGGCTGCCGCCCGCGGGCACCGTGCTGCCCAATGGCTACCCCTGCTACCTGAGCGGATGGGGGAGGCTGACCA
Seq A exon
CGGGGGGACCATTGCCAGACAAACTTCAGGACGCTCTGATGCCTGTGGTGGACCATGAGCAGTGCACACAGCCCGACTGGTGGGGCAGCCTTGCCATCCGCACCACGATGATCTGTGCCGGCGGCGCCGAGCAGGCCGGCTGCAAC
Seq C2 exon
GGCGACTCGGGCGGCCCCCTGAACTGCCAGGCTGAGGATGGGCAATGGGAGGTGCACGGCATCGCCAGCTTTGTGTCTTCACTGGGCTGCGACACTCCGAAGAAGCCCACTGTCTTCACCCGCGTCTCTGCCTTCAATGACTGGATTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027189-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.078
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
PF0008921=Trypsin=FE(21.6=100)
C2:
PF0008921=Trypsin=PD(21.6=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGACATCGCCCTGCTGAA
R:
GAAGACAGTGGGCTTCTTCGG
Band lengths:
254-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]