DreEX0002622 @ danRer10
Exon Skipping
Gene
ENSDARG00000017314 | CELA1 (1 of 7)
Description
chymotrypsin-like elastase family, member 1 [Source:HGNC Symbol;Acc:HGNC:3308]
Coordinates
chr22:7413592-7414204:+
Coord C1 exon
chr22:7413592-7413728
Coord A exon
chr22:7413834-7413976
Coord C2 exon
chr22:7414055-7414204
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACTTTATTTCTCTCCTGCAGCTG
3' ss Score
12.41
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
ATATGATATTGCTCTTCTGCGCCTGTCCTCCAACGCCTCCCTGAACACATACGTGCAGTTGGGCACTCTTCCCCCCTCTGGACAGGTTCTGCCCCACAACAACGCCTGCTACATCACTGGCTGGGGCCTCACTTCCA
Seq A exon
CTGGTGGCTCCCTCTCCGCTCAGCTGAAACAGGCCTATCTGCCCGTGGTCGACTACAATACCTGCTCTCGTGGTGACTGGTGGGGAAGCACCGTGAAGAACACCATGGTTTGCGCTGGTGGCGGAAGCCTGTCTGGATGCCAG
Seq C2 exon
GGTGACTCTGGCGGTCCTCTGAACTGTCAGGTCAGCGGTCAGTACGTCGTCCACGGTGTGACCAGCTTTGTGTCTTCATCCGGTTGTAACGCCTACCAGAAGCCAACCGTCTTCACTCGCGTCTCTGCCTACATCAGCTGGATTAATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017314-'8-10,'8-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.8=100)
A:
PF0008921=Trypsin=FE(20.3=100)
C2:
PF0008921=Trypsin=PD(20.3=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGCTCTTCTGCGCCTGTC
R:
AGTGAAGACGGTTGGCTTCTG
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]