RnoEX6023901 @ rn6
Exon Skipping
Gene
ENSRNOG00000021619 | Cela3b
Description
chymotrypsin-like elastase family, member 3B [Source:RGD Symbol;Acc:1307819]
Coordinates
chr5:155764764-155767098:-
Coord C1 exon
chr5:155766962-155767098
Coord A exon
chr5:155766535-155766677
Coord C2 exon
chr5:155764764-155764916
Length
143 bp
Sequences
Splice sites
3' ss Seq
AATGTCCTCTGTCTCCCCAGCCA
3' ss Score
9.28
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CAATGACATCGCTCTGGTCAAGCTCTCAAGAAGTGCCCAGCTGGGAGACACCGTCCAGCTCGCCTGCCTCCCTCCTGCTGGTGAAATCCTACCCAATGGAGCACCGTGTTACATCAGCGGCTGGGGCCGTCTCTCCA
Seq A exon
CCAATGGGCCTCTGCCAGACAAGCTGCAGCAGGCCCTGCTGCCTGTGGTGGACTATGCACACTGCTCCAAGTGGGACTGGTGGGGCTTCTCTGTGAAGAAGACCATGGTGTGTGCTGGCGGCGATATCCAGTCTGGCTGCAAC
Seq C2 exon
GGTGACTCTGGAGGACCCCTCAACTGTCCCGCTGAGAATGGAACCTGGCAGGTCCATGGTGTGACCAGCTTCGTGTCCTCCTTGGGCTGTAACACCCTGAAGAAGCCCACGGTGTTCACCCGTGTGTCAGCCTTCAATGAATGGATCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021619-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
PF0008921=Trypsin=FE(20.0=100)
C2:
PF0008921=Trypsin=PD(20.4=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAAGAAGTGCCCAGCTG
R:
TCATTGAAGGCTGACACACGG
Band lengths:
255-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]