MmuEX1006448 @ mm10
Exon Skipping
Gene
ENSMUSG00000023433 | Cela3b
Description
chymotrypsin-like elastase family, member 3B [Source:MGI Symbol;Acc:MGI:1915118]
Coordinates
chr4:137421900-137423981:-
Coord C1 exon
chr4:137423845-137423981
Coord A exon
chr4:137423247-137423389
Coord C2 exon
chr4:137421900-137422052
Length
143 bp
Sequences
Splice sites
3' ss Seq
AATGCTCTCTGTCTCCCCAGCCA
3' ss Score
9.5
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CAATGACATCGCCCTGGTCAAGCTCTCAAGAAGTGCCCAGCTGGGAGATGCAGTCCAGCTTGCCTGCCTCCCTCCTGCTGGTGAAATCCTACCCAACGGAGCACCCTGTTACATCAGCGGCTGGGGCCGGCTCTCCA
Seq A exon
CCAATGGACCTCTGCCAGACAAGCTGCAGCAGGCCTTGCTGCCTGTGGTGGACTATGAACACTGCTCCAGGTGGAACTGGTGGGGCTTGTCTGTGAAGACGACCATGGTGTGCGCCGGCGGCGATATCCAGTCTGGCTGCAAC
Seq C2 exon
GGTGACTCTGGAGGACCCCTCAACTGTCCCGCTGACAATGGCACCTGGCAGGTCCACGGTGTGACCAGCTTTGTGTCCTCCTTGGGCTGCAACACCCTGAGGAAGCCCACAGTGTTCACCCGTGTCTCAGCCTTCATTGACTGGATTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023433-'6-8,'6-6,8-8
Average complexity
S
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
PF0008921=Trypsin=FE(20.0=100)
C2:
PF0008921=Trypsin=PD(20.4=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAAGAAGTGCCCAGCTG
R:
CTGAGACACGGGTGAACACTG
Band lengths:
245-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types