GgaEX1005404 @ galGal3
Exon Skipping
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7984724-7986400:-
Coord C1 exon
chr18:7986171-7986400
Coord A exon
chr18:7985103-7985244
Coord C2 exon
chr18:7984724-7984912
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTTTTTGCCCATAGGCT
3' ss Score
12.32
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
CTGAAGACCAACCAGTCCGTGTGGGAGCAGCTGGAGCTGACGAGGGCCATGGCGATGGAGGAGGCGGCCGTGATGGAGATCGACAATTTTCCTCGTGCCATCATTTTGATTTACCTCGTCATTGCTTTCTCACCGTTTGGGTATTATTTGGCCATTCATATTGTGGCAGAAAAGGAGAGGAAGCTGAAGGAGTTCTTAAAGATATTGGGACTTCATGATACTGCCTTTTG
Seq A exon
GCTTTCCTGGGTGCTGCTGTACACCAGCCTGATCTTCGTCATGTCCATCCTGATGGCTGTGATCGCCACGGCCTCCTCTCTCTTTCCCCAGAGCAGTGCCTTCGTGATATTCCTCCTTTTCTTCCTGTATGGCATCTCCTCC
Seq C2 exon
GTATTCTTTGCCCTGATGCTGACGCCCCTCTTTAAGAAGTCAAAGCACGTGGGTATCGTTGAGTTCCTGGCCACGCTGGCTTTTGGGTTTGTGGGGCTGAACATCGTCCTGCTGGAAGACTTCCCCAAATCCTTCGTGTGGCTCTTCAGCCCTTTGTGCCAATGCAGTTTCCTGATCGGCATCGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.5=100)
A:
PF126982=ABC2_membrane_3=FE(12.1=100)
C2:
PF126982=ABC2_membrane_3=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGACCAACCAGTCCGTG
R:
CGTCAGCATCAGGGCAAAGAA
Band lengths:
254-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]