GgaEX1006146 @ galGal4
Exon Skipping
Gene
ENSGALG00000014305 | ACTN4
Description
Gallus gallus actinin, alpha 4 (ACTN4), mRNA. [Source:RefSeq mRNA;Acc:NM_205126]
Coordinates
JH375654.1:84711-86445:-
Coord C1 exon
JH375654.1:86392-86445
Coord A exon
JH375654.1:85142-85311
Coord C2 exon
JH375654.1:84711-84803
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCCATCCTTCTGTAGACC
3' ss Score
10.16
5' ss Seq
TGGGTAACG
5' ss Score
4.85
Exon sequences
Seq C1 exon
GCCATCATGACATACGTTTCCTGCTTCTACCACGCTTTCTCGGGGGCTCAGAAG
Seq A exon
ACCCTCTCCACTCTTTCTGGCTTTCAACTCCTCCTCCTCCTCCTCCCGGACCCTCCCGGTGCTCAGCCCCCAGCCTTTCCTTTCTGCCCATTCCTCACTCACCCACCCCGCGCAGCGAAGAGCCGCCTTCATGGGAGAGCGGAGGAAGATGAGGATGTGCTCAGAGATGG
Seq C2 exon
GCGGAGACGGCGGCGAACCGCATCTGCAAAGTGCTGGCGGTCAACCAGGAGAATGAGCACCTGATGGAGGACTATGAGAAGCTCGCCTCCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014305_MULTIEX1-3/3=2-C2
Average complexity
C3
Mappability confidence:
80%=80=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.000 C2=0.288
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
ENSGALT00000023128fB4686
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCATGACATACGTTTCCTG
R:
TCGGAGGCGAGCTTCTCATAG
Band lengths:
146-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]