GgaINT1005384 @ galGal4
Intron Retention
Gene
ENSGALG00000014305 | ACTN4
Description
Gallus gallus actinin, alpha 4 (ACTN4), mRNA. [Source:RefSeq mRNA;Acc:NM_205126]
Coordinates
JH375654.1:84711-86957:-
Coord C1 exon
JH375654.1:86872-86957
Coord A exon
JH375654.1:84804-86871
Coord C2 exon
JH375654.1:84711-84803
Length
2068 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
CCTCTGCTCTTCTCCTCCAGGCG
3' ss Score
12.02
Exon sequences
Seq C1 exon
ACATTGTCAACACAGCTCGCCCCGACGAGAAGGCCATCATGACTTACGTGTCCAGCTTCTACCACGCCTTTTCAGGGGCTCAGAAG
Seq A exon
GTACCGGGCGGGCTGCGTCCGTCGTGCCGTAACCGCAGCACCGCACGCTCACGCACTTCTCTTCCAGCTGGCCGCTGCCTCTCGCTGACTGGGAACCAGACCTCAGCTCCTTCACACGGGTTTAAGGGCTGCTCACATTCCCAGCGTGATCTGTAAGGCGATGCCAAGCGCTGGCACGGCCCCAGCACAGGGCAGGACGGCTCTGCAGAGCCGCTCGCATGGAAACACAGCCTGGGCCCTTTGCACAAGGCTGAGTAATCCAGCAGCAAACACAACCCGTCAGCCAGCTCTGGTCTGGGCCCCCAGCGCTTCTCTCTGCCACTGCATGCTCCAAGGGCTCAGAGGTCGCCGTGCTGCTCCCTTCACGCTCTCTCCTCCCTCTCTCTTTGCACAGATATTGTAGGCACTCTCAGGCCCGATGAGAAGGCCATCATGACATACGTTTCCTGCTTCTACCACGCTTTCTCGGGGGCTCAGAAGGTGAGCTTGGCTGGGGCAGCTTGGGTGCAACGCTGCTAACGCTGCCTGCAGGCGGCCGCGCTGCTGCACGGCTTCTGGGCGCGGGGATGCAGGCAGGCGTAGCTGTGCTCGGGTCAGCAGAGAGCAGAGCAAATCCCCGGTGGGGATGGGATGCTGTACCCGTGAGCCGAACCATCCGGGCCCCGGCGCCACCCCACCGAGCGCCGCCTCTCCGCTCTCAGCCTTCTTTAATGAGAAGTGAGGCTGCAGGCGTGGCACGGCGGAATTGCACCTTGCAGACATGAGGTGCTGCTGCGTCCTCCTTCCCCACAGCTCTGCTCTTTTGGCACTGTTCGGGCTTAGGGAGGGAGAACCCCATCACCTGCTCAGGGCTCTGTCACCCCTGCAGAGGTCCCCTCTGTGCTTCTCACCCTGCCTTATTTTACACCCAGAGTGCCGCACAGACCCATTGTGGGCAGCTCCAGGCATCGCTGAGCCCCAGGTGGAGCAGCAATTACCACACTCAGCTAATTAATTAGAAGTGTCAGGAAACAAATGAGCCTCTCAGGTGTCCCGTGGCTCACAAAGTGGGTTAGAGAGCTGCGGAGCGCTCGGTCAGCACAAGAGACCTTGTGCAGGAGGGTCGTCGTGCATCAGAGGACCTGACTTCGTGCACGGAGGATTGAAGGTGTTCCGTGGCACACAGCAAACCCAAGGGCAGGAATTCATGCCCAGCAGTGCCTGTGCTCAGGGTTTGGCAGCATCCCCGGGTGCTGCTCTGCACCCAGCAGGAATAAGGGAAGGGGGAAGCCCTCCCCGGCTCCTCCCGAGGTCCCCCGGTGCCCGTGGGTGGGTGCTGTGTGTTCAGCCCCAGCCCTGCTGTGTTCCAGGTGTGCTCACAGCCCTCGCAGCACAGCTGGCACACCCCTGTCCCCAATGCAGGGCTCCGTGTGCCACCACACCTCGCGCAGCCCCGCGCCTCTCCCTCGCAGCTCACAGCCTCCCTGCGTTCCCACCTCTCATTTTTGCCCTATTTGTTTTATTTTCCTTTCTGCCACCTCATTCCCAAGCTCTGTTTCTCCTCTCCCCATCCTTCTGTAGACCCTCTCCACTCTTTCTGGCTTTCAACTCCTCCTCCTCCTCCTCCCGGACCCTCCCGGTGCTCAGCCCCCAGCCTTTCCTTTCTGCCCATTCCTCACTCACCCACCCCGCGCAGCGAAGAGCCGCCTTCATGGGAGAGCGGAGGAAGATGAGGATGTGCTCAGAGATGGGTAACGGCCTGCCTGGGCAGGGCTCCGAGGGCACCAAGGCTGTGCCTGGAGTTGCCGTGCTGCTGGGGGCTGTGGGGGCTCCGGCACTGCGTCCCAATGCTGCCAGCACAGCTCTGGGTGCTTTATCCCCACGGGCAGAGAGCGGTGCTGGAGCCCTCTGCAGAGCTCAGCCCAGGGCTTGGGGAAGCTCTGAGCTCTTCAGCCGCTTCGAAACCTCCTCCACGAACCCACGTGTAGGGCTGAGCCTGCTGGGAGCCCCCCGGGGGGAGCCGGGGAGGGGGCGAGCGGGTGGGCACCGCGTCCACGCGGCCCCATCGCCCTCTGCTCTTCTCCTCCAG
Seq C2 exon
GCGGAGACGGCGGCGAACCGCATCTGCAAAGTGCTGGCGGTCAACCAGGAGAATGAGCACCTGATGGAGGACTATGAGAAGCTCGCCTCCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014305:ENSGALT00000023128:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.288
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NA
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]