GgaEX1006208 @ galGal3
Exon Skipping
Gene
ENSGALG00000012444 | AVR2A_CHICK
Description
NA
Coordinates
chr7:36159277-36163285:+
Coord C1 exon
chr7:36159277-36159484
Coord A exon
chr7:36161712-36161821
Coord C2 exon
chr7:36163131-36163285
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATTATCTTTCATAGGAA
3' ss Score
9.31
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGCCATTCTTGGCAGATCAGAAACACAAGAATGCATCTACTACAACGCTAATTGGGAGAAAGATAAAACAAATCGCAGTGGCATTGAACCCTGTTATGGAGATAAAGATAAAAGACGACACTGTTTTGCTACATGGAAGAATATCTCTGGATCAATTGAAATCGTGAAACAAGGTTGCTGGCTGGATGACATCAACTGTTACGACAG
Seq A exon
GAATGATTGCATAGAGAAAAAAGACAGCCCTGAAGTGTTCTTCTGTTGTTGTGAAGGCAACATGTGTAATGAACGCTTCTTCTATTTTCCAGAAATGGAGGTCACACAGC
Seq C2 exon
CAACTTCCAATCCAGTCACACCGAAGCCACCTCTATTCAATACCTTGCTTTATTCATTGGTGCCTATAATGGGAATTGCAGTGATTGTGCTCTTTTCATTTTGGATGTACAGACATCACAAGCTAGCATATCCTCCAGTACTTGTTCCAACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012444-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=85.7)
A:
PF0106418=Activin_recp=PD(33.0=78.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCTTGGCAGATCAGAAACAC
R:
AATAGAGGTGGCTTCGGTGTG
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]