GgaEX1006455 @ galGal4
Exon Skipping
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6974811-6976547:+
Coord C1 exon
chr17:6974811-6974913
Coord A exon
chr17:6975548-6975688
Coord C2 exon
chr17:6976402-6976547
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTGCTTGGGTGTCTCTGTAGATA
3' ss Score
8.05
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
GAGTGCCCCGCAAACGGAAGGAGCTTTCGAGAGGAGCAGTGTTCATCCTTTAACTCCCATGTGTATAATGGAAGAACGTATCAATGGAAACCTTTATACCCTG
Seq A exon
ATACCCCCTGACAGTTATGCTTCATGATGCTCCTTGTTGCCTCCCTTTGAGTGACACCAGCCCCTGTCTGCATCCCCGTGGCAGGGCTGTGTGCTGGGACGTGGTCGGCTCTGCTTGGCCTCGTCCCACTCCTATGGCAAG
Seq C2 exon
ATGACTATGTTCACATTTCTAGCAAGCCCTGTGACCTCCATTGCACCACTGTGGATGGTCAGAGACAATTAATGGTTCAGGCTCGGGATGGAACATCCTGCAAATACACTGATTTCCGAGGGGTTTGCGTGTCTGGAAAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955_MULTIEX1-1/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000004669fB4741
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACGGAAGGAGCTTTCGA
R:
TTTTCCAGACACGCAAACCCC
Band lengths:
234-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]