GgaEX1006456 @ galGal4
Exon Skipping
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6974811-6976547:+
Coord C1 exon
chr17:6974811-6974913
Coord A exon
chr17:6975769-6975835
Coord C2 exon
chr17:6976402-6976547
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGAATTGTTTTGTTTTTTAGCAG
3' ss Score
7.62
5' ss Seq
CCAGTGGGT
5' ss Score
3.07
Exon sequences
Seq C1 exon
GAGTGCCCCGCAAACGGAAGGAGCTTTCGAGAGGAGCAGTGTTCATCCTTTAACTCCCATGTGTATAATGGAAGAACGTATCAATGGAAACCTTTATACCCTG
Seq A exon
CAGGCGCTCACGTGTCTCCTGGGGGATTGGCAGGATAATGTTTTGCCATTGATGCTGTCTTGGGCCA
Seq C2 exon
ATGACTATGTTCACATTTCTAGCAAGCCCTGTGACCTCCATTGCACCACTGTGGATGGTCAGAGACAATTAATGGTTCAGGCTCGGGATGGAACATCCTGCAAATACACTGATTTCCGAGGGGTTTGCGTGTCTGGAAAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955_MULTIEX1-2/3=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000004669fB4742
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGCTTTCGAGAGGAGCA
R:
ATGTTCCATCCCGAGCCTGAA
Band lengths:
182-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]