GgaEX1007041 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2726261-2726958:-
Coord C1 exon
chr21:2726813-2726958
Coord A exon
chr21:2726579-2726684
Coord C2 exon
chr21:2726261-2726374
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGCCCATGCTGTCCTGGCAGGTC
3' ss Score
10.38
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
AATGTGGCTCAGGGGGCTCAGGCTCTGGTGATGGGAGTGAGTGTGAGCAGGACCGGTGCCGGCACTACGGGGGCTGGTGGGATGAGGATGCAGAGGACGACCGCTGTGTGTGTGACTTCACCTGCCTGGCGGTGCCACGCAGCCCG
Seq A exon
GTCTGTGGCTCTGACGATGTGACCTACGCCAATGAGTGTGAGCTGAAGAAGACGAGGTGTGAAAAACGCCAGGACCTCTATGTCACCAGCCAAGGAGCCTGCCGTG
Seq C2 exon
CCCTCACCACGACCCCACCGCCTCTCCCAGTTGTGCACTGCAGTCAGACCATCTATGGGTGCTGCCCGGACAACATGACCCTGGCGCTCGGAGTGGGTGCAGCCGGGTGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'31-28,'31-27,32-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=PU(34.0=36.7)
A:
PF0005016=Kazal_1=PD(62.3=91.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGGCTCAGGGGGCTC
R:
GGCTGCACCCACTCCGAG
Band lengths:
250-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]