GgaEX1007042 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2725106-2726684:-
Coord C1 exon
chr21:2726579-2726684
Coord A exon
chr21:2726261-2726374
Coord C2 exon
chr21:2725106-2725270
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGCCTTGCTCCACAGCCC
3' ss Score
11
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTCTGTGGCTCTGACGATGTGACCTACGCCAATGAGTGTGAGCTGAAGAAGACGAGGTGTGAAAAACGCCAGGACCTCTATGTCACCAGCCAAGGAGCCTGCCGTG
Seq A exon
CCCTCACCACGACCCCACCGCCTCTCCCAGTTGTGCACTGCAGTCAGACCATCTATGGGTGCTGCCCGGACAACATGACCCTGGCGCTCGGAGTGGGTGCAGCCGGGTGCCCAA
Seq C2 exon
GCACCTGCCAGTGCAACCCCTATGGCTCCTATGGAGGAACCTGCGACCCTGCCACGGGGCAGTGCTCCTGCAAGCCAGGTGTTGGGGGGCTCAAGTGTGACCGCTGTGAGCCTGGCTTCTGGAACTTCCGTGGCATCGTCACCGACAGCAAGAGCGGCTGCACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'32-29,'32-28,33-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=PD(62.3=91.7)
A:
NO
C2:
PF0005319=Laminin_EGF=WD(100=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGGCTCTGACGATGTG
R:
ATGCCACGGAAGTTCCAGAAG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]