GgaEX1010035 @ galGal4
Exon Skipping
Gene
ENSGALG00000003194 | ATP6V0A2
Description
V-type proton ATPase 116 kDa subunit a isoform 2 [Source:RefSeq peptide;Acc:NP_990054]
Coordinates
chr15:4912338-4913715:-
Coord C1 exon
chr15:4913597-4913715
Coord A exon
chr15:4912936-4913146
Coord C2 exon
chr15:4912338-4912457
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCATTATCTTTTAGACA
3' ss Score
9.51
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATTTGGAACTTGGCAAGCAACCGTCTCAGTTTTTTAAATTCTTTCAAGATGAAAATGTCTGTGATTCTTGGAGTGGCTCACATGACATTTGGAGTTGTATTAGGAGTATTTAACCACTT
Seq A exon
ACATTTCAAGAAGAAGTACAATATTTATTTGGTTTTTCTTCCTGAACTTTTGTTCATGATGAGCATCTTCGGCTACCTTGTGTTCATGATTTTCTTTAAGTGGTTAGCATACTCTGCAGAGGACTCCACAACTGCTCCAAGCATTCTGATTCAGTTTATTAACATGTTCCTGTTTCCTGGTGGTGAAGCAGATGCCTTTTATACTGGACAG
Seq C2 exon
GTTGGTCTACAGAGATTTTTACTGAGTGTTGCTTTTCTTTCTGTTCCTGTAATGCTTTTTGGAAAACCACTTTATCTATATTGGTTGCACAGTGGAAGTCGAGGCATTAGAACGTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003194-'24-25,'24-24,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
PF0149614=V_ATPase_I=FE(8.7=100)
C2:
PF0149614=V_ATPase_I=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAACTTGGCAAGCAACC
R:
CCTGTACGTTCTAATGCCTCGAC
Band lengths:
238-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]