RnoEX0013272 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37372183-37376260:-
Coord C1 exon
chr12:37376142-37376260
Coord A exon
chr12:37373844-37374054
Coord C2 exon
chr12:37372183-37372302
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTCACGCGCTTCCCTTGCAGGCA
3' ss Score
11.01
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATTTGGAACCTGGCCACAAATCGCCTCACGTTCCTCAACTCCTTCAAGATGAAGATGTCTGTGATTTTAGGAATTTTTCACATGACCTTTGGTGTCATTCTGGGAATATTTAACCACTT
Seq A exon
GCACTTCAGGAAGAAGTTCAACATCTACCTGGTCTCGGTCCCCGAGATCCTGTTTATGCTCTGCATCTTTGGGTACCTGATTTTCATGATCATCTACAAGTGGCTGGCGTACTCGGCAGAGACCTCCAGAGAGGCCCCCAGCATCCTCATCGAGTTCATTAACATGTTCCTGTTCCCGTCCAGTGAGACACACGGCCTCTACCCGGGGCAG
Seq C2 exon
GCACACGTCCAGAAGGTGTTGTTGGCTCTCACCGTGCTGGCTGTCCCTGTGCTCTTCTTGGGAAAGCCGCTCTTTCTGCTGTGGCTGCACAATGGGCGCAGTTGCTTCGGCGTGAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'49-47,'49-45,51-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
PF0149614=V_ATPase_I=FE(15.8=100)
C2:
PF0149614=V_ATPase_I=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGAACCTGGCCACAAATC
R:
GCTCACGCCGAAGCAACT
Band lengths:
236-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]