GgaEX1010036 @ galGal4
Exon Skipping
Gene
ENSGALG00000003194 | ATP6V0A2
Description
V-type proton ATPase 116 kDa subunit a isoform 2 [Source:RefSeq peptide;Acc:NP_990054]
Coordinates
chr15:4909965-4912097:-
Coord C1 exon
chr15:4911978-4912097
Coord A exon
chr15:4910700-4910817
Coord C2 exon
chr15:4909965-4910136
Length
118 bp
Sequences
Splice sites
3' ss Seq
AATGTGTTTTCGTGTTGTAGTTT
3' ss Score
7.6
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
CGTGGCTACAAGCTCATTCGGAAAGAGAGTGAAGAAGAACTTTCTCTGCTGCAGCCTCATGATGTGGAGGAAGGAAGCAGTCACTCAGATAGTGGGCACAGAGAAGAGGATGGAGAGGAG
Seq A exon
TTTAATTTTGCAGATGCTTTTATGAATCAAGCCATTCATACCATTGAGTACTGTCTAGGATGTATTTCTAATACAGCATCGTATCTGAGACTCTGGGCATTAAGTCTTGCGCATGCAC
Seq C2 exon
AGTTATCAGAAGTTCTGTGGCAAATGGTGATGAGAGTGGGCCTTCGTGTGGACACAACCTATGGTGTCTTACTGCTAGTCCCTGTTCTAGCCTTTTTTGCTGCGCTGACAGTTTTTATTCTTTTGGTCATGGAGGGGCTTTCTGCTTTTCTCCATGCTATACGACTTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003194-'27-29,'27-28,28-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTACAAGCTCATTCGGA
R:
AGCCCCTCCATGACCAAAAGA
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]