MmuEX6021022 @ mm10
Exon Skipping
Gene
ENSMUSG00000038023 | Atp6v0a2
Description
ATPase, H+ transporting, lysosomal V0 subunit A2 [Source:MGI Symbol;Acc:MGI:104855]
Coordinates
chr5:124718439-124720022:+
Coord C1 exon
chr5:124718439-124718558
Coord A exon
chr5:124719049-124719166
Coord C2 exon
chr5:124719851-124720022
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGGTCTCTGTTGTCCCTCAGTTT
3' ss Score
8.54
5' ss Seq
CACGTATGT
5' ss Score
7.26
Exon sequences
Seq C1 exon
AGCGGTTACACACTCGTGAGGAAGGACAGCGAGGAAGAGGTGTCTCTTCTGGGCAACCAGGACATAGAAGAGGGCAACAGCCGCATGGAAGAAGGCTGCCGAGAAGTGACGTGTGAGGAG
Seq A exon
TTTAACTTCGGGGAGATCCTGATGACGCAGGCCATCCACTCCATTGAGTACTGCCTCGGCTGCATCTCCAACACCGCCTCCTACCTGAGGCTCTGGGCACTCAGCCTGGCCCATGCAC
Seq C2 exon
AGCTCTCTGATGTGCTGTGGGCCATGCTGATGCGCGTGGGGCTGCGTGTGGACACCACCTATGGGGTCTTGCTGCTGCTGCCTGTCATGGCTTTCTTTGCAGTTTTGACCATTTTTATCCTTCTGGTCATGGAGGGTCTTTCTGCATTCCTCCACGCCATAAGGCTTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038023-'38-45,'38-44,41-45
Average complexity
S
Mappability confidence:
89%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
PF0149614=V_ATPase_I=FE(4.8=100)
C2:
PF0149614=V_ATPase_I=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACTCGTGAGGAAGGACA
R:
AGACCCTCCATGACCAGAAGG
Band lengths:
252-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types