GgaEX1013301 @ galGal3
Exon Skipping
Gene
ENSGALG00000012555 | CCDC148
Description
NA
Coordinates
chr7:37960295-37974272:-
Coord C1 exon
chr7:37974134-37974272
Coord A exon
chr7:37971852-37972058
Coord C2 exon
chr7:37960295-37960435
Length
207 bp
Sequences
Splice sites
3' ss Seq
ATGCATTACTTTTTTTTTAGATC
3' ss Score
7.98
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GAACACTGACTGGAAGGCAGAAGATCAATGGATTTTTCAGACAGTTGTCAACCAGTATCCGAGTGATCTTCAGCGAAGAAGGACTTTGTACCTTGATATGTTGCAGAGATGTCTTCCTCACAAGTCTAGGCACGAGCTG
Seq A exon
ATCACTCATGAGAAAGCTTGGGATCATTACAATTTCTTTAAGAATCAGCGCAGAGTCTTGATATTAAATTGGACTCAAGCTAGGAAGGCGTTCTTCCTGAAGGCGGTGATGGCTGTTGCTGAAGCCTCTGCTGCTCAGGAGGCAGAAGCAGTATCAGCTGGTAACAGACGAAAGCAACAGGAGATCTGTGCTGAGCTGAAAGCCAAG
Seq C2 exon
GTCCTGCAGTGGAGAGCACAGCAGGAGGAGGCGGCTGAGCTGGAAGCTGCTGTGGCTGCTAGAAGAAAAGAAAAGGAAGATGAGAAAGAAAGGATACAGAAAGAGCAGGAAATGATTCACAGAGCTCAGGAGAAAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.072 C2=0.489
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACTGACTGGAAGGCA
R:
TCTTTCTCCTGAGCTCTGTGA
Band lengths:
276-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]