MmuEX6101425 @ mm10
Exon Skipping
Gene
ENSMUSG00000036641 | Ccdc148
Description
coiled-coil domain containing 148 [Source:MGI Symbol;Acc:MGI:3039583]
Coordinates
chr2:58934369-58983007:-
Coord C1 exon
chr2:58982869-58983007
Coord A exon
chr2:58980370-58980576
Coord C2 exon
chr2:58934369-58934509
Length
207 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTGTTACCATTGTAGGTA
3' ss Score
10.22
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TAACTTCCAACTAAGTGCAGAAGAGCACTGGACTTACCAGGCTGTCTTAGACCAGTATCCCGGAAATCTCCTTGGCAGAAGAGCTCTGTACTTGGACATGTTGCAAAGATATTTCCCTCACAAGTCCAGGCATCATTTG
Seq A exon
GTAGAACACGAGAAATACTGTGACCAGTATCACTTTGCTAGAGAGCAGAGAAGAATCCTGATAGACAATTGGAGCAGGAGCAGGAAAGACTTTATACAGAAAGCCATGCTGACTCTCCTCGAAGCCTGTGCAGCCCATGAAATGGGGAGCCTTCTGGCCAAGGACAGGAGACGGCAACAGGAACTATGTGCTGACCTGAAAGCCAAG
Seq C2 exon
GTTTCTCAATGGCGAGCCCAACAAGAAGAGCTATCAAGACTGGAAATGGAAATTTCAGCCAGAAGAAGAGAAAGGGAAGAAGAGAAAGAGAAATTGTGGAAAAAGAAGGAATTGCTACGAAGGGAGGAGACAGAGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036641-'14-15,'14-13,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCAACTAAGTGCAGAAGAGC
R:
TAATCTCTGTCTCCTCCCTTCGT
Band lengths:
276-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types