GgaEX1013302 @ galGal3
Exon Skipping
Gene
ENSGALG00000012555 | CCDC148
Description
NA
Coordinates
chr7:37971852-37978410:-
Coord C1 exon
chr7:37978229-37978410
Coord A exon
chr7:37974134-37974272
Coord C2 exon
chr7:37971852-37972058
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTTGATTTTCTGTAGGAA
3' ss Score
9.48
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GCCATAGTGAATGGTTTTGAAGAGAAAAATGGACTTTTCCATGAAGTTCCTTCAGCTCTACTGTCTTTGGAGTTCCCTTACCCAGACTTGAGGAGCTTTGTTATTAATGAATACCGTAAGCTTGCAAATGAATACTGGTCTAAGCTGCAAGAGATTGATCAACAGCTAAACGTCATATATAG
Seq A exon
GAACACTGACTGGAAGGCAGAAGATCAATGGATTTTTCAGACAGTTGTCAACCAGTATCCGAGTGATCTTCAGCGAAGAAGGACTTTGTACCTTGATATGTTGCAGAGATGTCTTCCTCACAAGTCTAGGCACGAGCTG
Seq C2 exon
ATCACTCATGAGAAAGCTTGGGATCATTACAATTTCTTTAAGAATCAGCGCAGAGTCTTGATATTAAATTGGACTCAAGCTAGGAAGGCGTTCTTCCTGAAGGCGGTGATGGCTGTTGCTGAAGCCTCTGCTGCTCAGGAGGCAGAAGCAGTATCAGCTGGTAACAGACGAAAGCAACAGGAGATCTGTGCTGAGCTGAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555-'9-10,'9-9,10-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGACTTGAGGAGCTTTGT
R:
TACTGCTTCTGCCTCCTGAGC
Band lengths:
255-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]