MmuEX6101424 @ mm10
Exon Skipping
Gene
ENSMUSG00000036641 | Ccdc148
Description
coiled-coil domain containing 148 [Source:MGI Symbol;Acc:MGI:3039583]
Coordinates
chr2:58980370-59001995:-
Coord C1 exon
chr2:59001814-59001995
Coord A exon
chr2:58982869-58983007
Coord C2 exon
chr2:58980370-58980576
Length
139 bp
Sequences
Splice sites
3' ss Seq
AACATTTTTATTGCTTCCAGTAA
3' ss Score
5.47
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TTACTAGATCACTCTTCAGAAGAAAAACCTAACTTGCTCAGCGAACAGCCCATGGAGTTAGTAACGTTGGACTGCCCATACCCAGATCTGAAATCGTCAATCCTTAACGAGTTCTGTAACTTTACAGAGAGATATCAAGAGAAACTTGAAGATTTTGATCTGCAATTAGAAGACATACGCAG
Seq A exon
TAACTTCCAACTAAGTGCAGAAGAGCACTGGACTTACCAGGCTGTCTTAGACCAGTATCCCGGAAATCTCCTTGGCAGAAGAGCTCTGTACTTGGACATGTTGCAAAGATATTTCCCTCACAAGTCCAGGCATCATTTG
Seq C2 exon
GTAGAACACGAGAAATACTGTGACCAGTATCACTTTGCTAGAGAGCAGAGAAGAATCCTGATAGACAATTGGAGCAGGAGCAGGAAAGACTTTATACAGAAAGCCATGCTGACTCTCCTCGAAGCCTGTGCAGCCCATGAAATGGGGAGCCTTCTGGCCAAGGACAGGAGACGGCAACAGGAACTATGTGCTGACCTGAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036641-'12-13,'12-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGCCCATACCCAGATCT
R:
ACAGGCTTCGAGGAGAGTCAG
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types