GgaEX1014931 @ galGal4
Exon Skipping
Gene
ENSGALG00000006184 | CERS5
Description
ceramide synthase 5 [Source:HGNC Symbol;Acc:HGNC:23749]
Coordinates
chrLGE22C19W28_E50C23:277978-280222:+
Coord C1 exon
chrLGE22C19W28_E50C23:277978-278028
Coord A exon
chrLGE22C19W28_E50C23:278658-278750
Coord C2 exon
chrLGE22C19W28_E50C23:280094-280222
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTGTTTGTTTTCCAGCCT
3' ss Score
8.99
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCACCCTGGTTTTGGGACACACGACAGTGCTGGTACAGCTACCCCTTTCAG
Seq A exon
CCTCTAACATCCAGGCTTTATTATTATTATATCTTGGAGCTGGCCTTCTATTGGTCTCTCATGTTTTCTCAGTTTACAGACATTAAACGGAAG
Seq C2 exon
GACTTCCTGATCATGTTCGTTCATCATTTGGCTACAATTGGGCTCATTACGTTCTCTTATATGAACAATATGGTGCGTGTTGGAACGCTGGTGCTGTGTCTCCATGATGCATCTGATTTCCTCTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006184-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTTGGGACACACGACAG
R:
AGGAAATCAGATGCATCATGGAGAC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]