RnoEX0020319 @ rn6
Exon Skipping
Gene
ENSRNOG00000052990 | Cers5
Description
ceramide synthase 5 [Source:RGD Symbol;Acc:1311597]
Coordinates
chr7:141390424-141392923:-
Coord C1 exon
chr7:141392873-141392923
Coord A exon
chr7:141392199-141392291
Coord C2 exon
chr7:141390424-141390552
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACTGCTCCTTTCTCTTCCAGCCA
3' ss Score
10.89
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATGCCTTGGCTCTGGGATACCCGACAGTGCTGGTACAACTATCCATATCAG
Seq A exon
CCACTCTCAAGAGAGCTCTATTACTACTATCTCACACAGCTGGCCTTCTACTGGTCCCTCGTGTTCTCTCAGTTTATAGATGTTAAAAGAAAG
Seq C2 exon
GACTTCCTGATGATGTTTATGCATCATTTGATCGCCGTCACGCTCATCAGTTTCTCCTACATCAACAACATGGTGCGAGTGGGAGCCATCATCTTGTGTCTGCATGACTCCGCCGACTCCTTGCTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052990-'14-12,'14-10,15-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTTGGCTCTGGGATAC
R:
TTCTAGCAAGGAGTCGGCGG
Band lengths:
180-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]