GgaEX1016324 @ galGal4
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
collagen alpha-1(XII) chain precursor [Source:RefSeq peptide;Acc:NP_990352]
Coordinates
chr3:80214806-80223093:+
Coord C1 exon
chr3:80214806-80214913
Coord A exon
chr3:80215039-80215093
Coord C2 exon
chr3:80222977-80223093
Length
55 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTCTCTCCTTCAGAGG
3' ss Score
11.92
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
ATTCATTCATGTTGTTGTGAGCTGAAAGGGCAGACATGAGGACAGCGCTGTGCTCGGCGGTGGCTGCGCTGTGTGCCGCCGCCCTCCTCTCCTCCATCGAGGCTGAAG
Seq A exon
AGGAACGCTTCTCCTTCCTTGCCCAGCTCCTTCTGTGCTCTGTTTCTCCTGACTG
Seq C2 exon
TTAATCCACCGTCAGACTTGAATTTTACAATTATAGATGAACATAATGTTCAAATGTCATGGAAAAGGCCACCAGATGCAATAGTGGGTTACAGGATAACTGTGGTTCCTACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908_MULTIEX1-1/17=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004116=fn3=PU(47.5=95.0)
Main Inclusion Isoform:
ENSGALT00000025640fB6331
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGAGGACAGCGCTGTG
R:
GTGGCCTTTTCCATGACATTTGA
Band lengths:
148-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]