GgaEX1016520 @ galGal4
Exon Skipping
Gene
ENSGALG00000016195 | COL22A1
Description
collagen, type XXII, alpha 1 precursor [Source:RefSeq peptide;Acc:NP_001132911]
Coordinates
chr2:144340453-144374426:-
Coord C1 exon
chr2:144373623-144374426
Coord A exon
chr2:144345828-144345986
Coord C2 exon
chr2:144340453-144341019
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTCTTTATTTTCCTTGATAGGCC
3' ss Score
10.08
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
TTTTCTTTCTCTATTTTCTCTCTTTTGAGTCTCTCATTTCTTCTTTCTTTCTTTGCTCCTTCTCATTTATCTCTCTCTCTTTCTCCTCTTTTACTCTCCTTTTAATTTTTTTCCTCTTTTTCTGTTTTTTTCTTCTTTTCTGTACTTTTTTTTCTCCATTTACTCTTTTCTTCTCTGTTGATTTAATTTCTTCTATCTTTTTTTCTTTTTTCTCCCTCTTCTCTTTCTCTCTCGTTTTTTTTTTTTTCCCCCTGCATTTTCTTCATCTTCTCCTCTCCCACCCCCCCGGAGGGAGCAGAGGATGTAGCATTTTTCCCATCCTTGCTCTGTCACCAGCACTTCTGTGTGAGTGCATGCGTGTCTGTCTGTCTGCGTGTCTGTGTGTCCCCTGCACGCCCACCTACCACCCATCCCATCCAAGCTGACAGCTGCAGAGTGCAGCGGGGCTGAGGCTGAGTGTAGGCACCAGGCTCCCTCCTGGTGCTGTTGTGCTTTCGCAG
Seq A exon
GCCACAGATTGGATTTCTAGAGAGCTTCCCACCACGGTGAAAAGACAAGCTGATGTGAGAAAGGAGATATGTCTGTTATGGGAAGATGCCATTTACCCTGTCTCCTAATTCTTTTCACACTTATGTTCAGTGAGGAGAGAACTGAGGCACAGAGAGCAG
Seq C2 exon
GTTGCAAGAATGTTCATTATGACCTTGTTTTCATCTTGGATGCCTCCTCTAGTGTTGGAAAAGAAGATTTTGAGAAGGTTCGGCAGTGGGTGTCTAATTTGGTGGAAACTTTTGAGATTGGTCCTGACAAAACCCGCGTCGGTGTGGTGCGATACAGTGACCGGCCAACCACTGAGTTTGACCTGGGAAAGTACAAAACCTGTGAGGAAATCAAAGAGGCCGCCCGAAAAATTAGGTATTATGGGGGTAATACAAACACTGGAGATGCTCTCCGGTACATCAACACTTACAGTTTTTCCAAAGAGGCAGGTGGGAGACTTAGTGATCGAACTGTTAAAAAAGTGGCTATCCTTCTGACTGATGGAAGGAGCCAGGATTATGTCTTGGATCCGGCCAATGCAGCTCGTCAGGCTGGAATTAGGATCTTTGCTGTGGGTGTCGGCGAAGCCTTAAAAGAAGAATTGGATGAGATTGCTTCAGAACCAAAGTCTGCTCACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016195-'1-3,'1-2,8-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009223=VWA=WD(100=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTTCTGTGTGAGTGCA
R:
CCACTGCCGAACCTTCTCAAA
Band lengths:
256-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]