MmuEX0012220 @ mm10
Exon Skipping
Gene
ENSMUSG00000079022 | Col22a1
Description
collagen, type XXII, alpha 1 [Source:MGI Symbol;Acc:MGI:1916950]
Coordinates
chr15:72006622-72034227:-
Coord C1 exon
chr15:72033833-72034227
Coord A exon
chr15:72009383-72009534
Coord C2 exon
chr15:72006622-72007188
Length
152 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCTTTTTCCACACAGGAA
3' ss Score
10.7
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GAAACCCAGAGACCGGCCAGTGAGCCCCTGGGGAGGCCTAGGGCAGCTTTGTTCCTGGACAGCACAGGCTGGAGAGGGCTGTGGCTTCTCCCTGAGGACCCGCTTGGCCCTTTTCTGCTTTGCCCTCTCTCACACACTTGCCATTCTTCTCTGTAACTTTCAGCTTTTCCCTCCAACTGCTGCCTTGAAAGCTAGCTCTGTTTCTGGACCCATGGTCTAGGGGAAGACTCCCACATTTTAGGACTTCTTTCAGTGGCAGGCAGGGTGTCTGTATGCTACAGGGGAATCCCAGAAGGGGACTGCCTGAGACTGGGATCTTCCCTGAACCCTGCTTCCAGTAGTTCTGATCCCAGGACACAAGCCCAGGCTGGATCCCTTGAACATCATCCTAGCAG
Seq A exon
GAAATGCTCCACTAGACCTCTTCCTGACCAAGATATGCCTGTCTTCACGAGCAGGAGAGCCATGGCTGTCCCCAGAGGGAATCCTTTGGCCTGTCTTCTGTGGATTCTACTGCTCTGGGGAGGGGATGGTGGCTGCCAGGCCCAACGTGCAG
Seq C2 exon
GTTGCAAAAGTGTGCAGTATGATCTGGTCTTCCTCCTGGACACGTCTTCTAGTGTGGGCAAGGAGGACTTTGAGAAAGTCCGCCAGTGGGTAGCCAACCTGGTAGACACCTTTGAGGTGGGCCCTGGCCACACCCGTGTGGGGGTTGTGCGCTACAGTGACCGGCCCACTACAGCCTTTGAACTGGGCCACTTCAACTCTCGCGAGGAGGTGAAGGCAGCTGCGCGGCGCATCACCTACCATGGCGGTAACACGAACACGGGTGACGCCCTGCGTTATATCACCAGCCGCAGCTTCTCCGCCCAGGCCGGCGGCAGACCTGGGAATCGTGCCTTCAAGCAGGTGGCCATCCTGTTGACTGATGGTCGTAGCCAAGACCTGGTGCTGGATGCTGCAGCAGCTGCCCATGCAGCCGGCATCCGCATTTTTGCTGTTGGTGTGGGTGCAGCATTGAAGGAGGAACTGGATGAGATTGCCTCAGAACCCAAGTCTGCGCATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079022-'0-3,'0-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009223=VWA=WD(100=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTTTCAGTGGCAGGCAG
R:
CCACTGGCGGACTTTCTCAAA
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types