GgaEX1016679 @ galGal3
Exon Skipping
Gene
ENSGALG00000002552 | COL3A1
Description
NA
Coordinates
chr7:581223-581703:-
Coord C1 exon
chr7:581605-581703
Coord A exon
chr7:581398-581451
Coord C2 exon
chr7:581223-581276
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGATCTTTCTCTTTTGTAAGGGT
3' ss Score
6.7
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGTAATCAGGGTGAACCTGGCCGTTCTGGTCCACCTGGCCCAGCAGGCCCACGTGGTCAGCCAGGTGTAATGGGTTTTCCTGGTCCAAAAGGAAATGAG
Seq A exon
GGTGCACCAGGTAAGAATGGAGAAAGAGGCCCTGGTGGACCACCTGGAACTCCT
Seq C2 exon
GGTCCTGCTGGGAAGAATGGTGATGTTGGCCTCCCCGGTCCTCCTGGACCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002552-'31-34,'31-33,32-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(14.5=90.0)
A:
PF0139113=Collagen=PD(7.6=27.8)
C2:
PF0139113=Collagen=FE(27.4=100),PF0139113=Collagen=PU(6.9=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCTGGCCGTTCTGG
R:
GGGAGGCCAACATCACCATTC
Band lengths:
124-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]