GgaEX1016811 @ galGal4
Exon Skipping
Gene
ENSGALG00000008266 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chr4:14054402-14056017:+
Coord C1 exon
chr4:14054402-14054527
Coord A exon
chr4:14054860-14054976
Coord C2 exon
chr4:14055856-14056017
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTGGTATTTCTTATTCTAGGTC
3' ss Score
9.3
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTCTGAGTGAAGTTGGACTGAAAGGCCCTGCAGGTCTCCCTGGTCTGAAGGGTGAGGAAGGTTCTCCAGGTTTGGGTAGAGGAGCTGTAGGATTCCCGGGGCCAAAAGGCTCATCTGGAGACCTGG
Seq A exon
GTCCCCCAGGTCCTGTGGGACTGCCTGGCTTGCCAGGAACTCCTGGAGTTTCTCTTCCTTCTGATATACGTGGGAGACCTGGGGATGCTGGCCATCCAGGACTTGATGGGAGTTCAG
Seq C2 exon
GTCTTCCAGGTCCTCCGGGACAACGAGGGCCCCCTGGACCAGCTTTTGACCAAGGTGACACAGGCAATCCAGGTTTCCCTGGTGTTCCTGGCTTGCGAGGTGGTAAGGGCGATGTGGGACCAACAGGTCCCATTGGACTCCCTGGCGTATCTGGATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008266-'67-53,'67-50,68-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(3.2=4.7),PF0139113=Collagen=PU(65.0=90.7)
A:
PF0139113=Collagen=PD(33.3=50.0),PF0139113=Collagen=PU(27.4=42.5)
C2:
PF0139113=Collagen=PD(71.0=80.0),PF0139113=Collagen=PU(24.6=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTGAAGGGTGAGGAAGG
R:
ATCCAGATACGCCAGGGAGTC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]