GgaEX1016985 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9338826-9339240:+
Coord C1 exon
chr12:9338826-9338861
Coord A exon
chr12:9338949-9338993
Coord C2 exon
chr12:9339208-9339240
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCTTGTCCTCTGCAGGGT
3' ss Score
11.97
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGCAATCAGGGAGAGCCAGGGCCACCAGGACCTCCG
Seq A exon
GGTGCTGCTGGCCCCCCGGGGAGCCAGGGTCCATCTGGGATGAAG
Seq C2 exon
GGTGATCCAGGGGAACCTGGTGCCAGCATCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'70-75,'70-74,71-75=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.7=100)
A:
PF0139113=Collagen=FE(21.2=100),PF0139113=Collagen=PU(10.1=53.3)
C2:
PF0139113=Collagen=PD(12.1=72.7),PF0139113=Collagen=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATCAGGGAGAGCCAGG
R:
CGGATGCTGGCACCAGGTT
Band lengths:
68-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]