GgaEX1017239 @ galGal3
Exon Skipping
Gene
ENSGALG00000014144 | F1NZW6_CHICK
Description
NA
Coordinates
chr4:68584573-68599897:+
Coord C1 exon
chr4:68584573-68584754
Coord A exon
chr4:68594316-68594429
Coord C2 exon
chr4:68599790-68599897
Length
114 bp
Sequences
Splice sites
3' ss Seq
TACTCTTTGCTCATTTTCAGCAC
3' ss Score
8.22
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
TCGAGTCCTCTTGCCATGCAGAACATTTTGTGAAGCAGCAAAAGAAGGGTGTGAACCAGTCCTAGGGATGGTAAATGCTTCTTGGCCAGAATTCCTCAAGTGCTCTCAATTCCACAACCAAACTGAAAACGACACAACTGCAAGGGTATGCTTCTCGCCACACCAAGAAAAAGGAAAGCAAT
Seq A exon
CACTATGTGGAGGAGAGGAGAGTTTCCTGTGTGCCAGTGGAATCTGCATTCCAGGGAAACTGCAGTGTAATGGCTACAATGACTGTGATGACTGGAGTGATGAGGTTCATTGCA
Seq C2 exon
ACTGCAGTGACGATTTATTTCATTGCAACACAGGAAAATGCCTCAATTATACCTTTGTTTGTGATGGATATGATGACTGTGGAGACCTTAGTGATGAAGAGAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014144-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139217=Fz=PD(42.5=82.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=97.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCAAAAGAAGGGTGTGA
R:
TCACTAAGGTCTCCACAGTCA
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]