MmuEX0012469 @ mm10
Exon Skipping
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72360651-72422209:-
Coord C1 exon
chr5:72422025-72422209
Coord A exon
chr5:72372098-72372211
Coord C2 exon
chr5:72360651-72360758
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCCTTACTTTTCCAGCAC
3' ss Score
9.69
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
Exon sequences
Seq C1 exon
GCATGGTCTTCTACCCTGTAGATCTTTCTGTGAGGCTGCAAAAGAAGGATGCGAATCTGTCCTGGGAATGGTGAACTCCTCCTGGCCGGATTCCCTCAGATGCTCTCAGTTTAGGGACCACACTGAGACTAACAGCAGTGTCAGAAAGAGCTGCTTCTCACTGCAGCAGGAACATGGAAAGCAAT
Seq A exon
CACTCTGTGGAGGGGGCGAGAGCTTCCTGTGTACCAGCGGGCTCTGCGTCCCCAAGAAGCTGCAGTGTAACGGCTATAATGACTGTGATGACTGGAGCGACGAGGCGCATTGCA
Seq C2 exon
ACTGCAGCAAGGATCTGTTTCACTGTGGCACAGGCAAGTGCCTCCATTACAGCCTCTTGTGTGATGGGTACGATGACTGTGGGGACCTGAGTGACGAGCAAAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220-'11-10,'11-9,14-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139217=Fz=PD(43.3=82.5),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCAAAAGAAGGATGCGA
R:
ACTCAGGTCCCCACAGTCATC
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types