GgaEX1017244 @ galGal4
Exon Skipping
Gene
ENSGALG00000014144 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr4:66332442-66338031:+
Coord C1 exon
chr4:66332442-66332540
Coord A exon
chr4:66333947-66334039
Coord C2 exon
chr4:66337800-66338031
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCTTGCCTTTATTTTCCAGTTT
3' ss Score
9.25
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTCAAACCCTCTGTCAGGAGGGAGACCAGAGATGTACTTCCTGTCCTGATCCATGTGGAACTTCTCTCTGTGAGATGAGAAACAGCCAGACAAACTGCA
Seq A exon
TTTGATGCCAGGGTTTCCATGACCTTTTGAAGATGATGATAAAAACCAGCCTTTCAATGAAGTTAGCCAGTGAAAACTGAGATAGAAAAGACA
Seq C2 exon
GTCAGTGTGAACCAATTACTCTGGAACTCTGTATGAACTTGCCTTACAACTACACTAGTTACCCAAACTACCTGGGGCACAGGACTCAGAAAGAAGCTTCTGTCAGTTGGGAGTCTTCTCTCTTCCCAGCCTTGGTTCAGACCAACTGCTACAAGTACCTTATGTTTTTCGCCTGTACAGTCTTAGTACCAAAATGTGACCCCCATACAAATCAACGGATCCCACCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014144_MULTIEX1-2/5=1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139217=Fz=PU(64.1=96.2)
Main Inclusion Isoform:
ENSGALT00000022884fB6408
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTCCTGATCCATGTGG
R:
AGACTCCCAACTGACAGAAGCT
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]