GgaEX1017245 @ galGal4
Exon Skipping
Gene
ENSGALG00000014144 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr4:66333947-66338031:+
Coord C1 exon
chr4:66333947-66334039
Coord A exon
chr4:66334652-66334773
Coord C2 exon
chr4:66337800-66338031
Length
122 bp
Sequences
Splice sites
3' ss Seq
AGGTTTGTTGTATTTTTCAGTTT
3' ss Score
8.32
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTTGATGCCAGGGTTTCCATGACCTTTTGAAGATGATGATAAAAACCAGCCTTTCAATGAAGTTAGCCAGTGAAAACTGAGATAGAAAAGACA
Seq A exon
TTTACTTGCCTGCTCTTCTTCAAGAAGTATTTAGAAAGTGTTATGGAATGGGAAGGAAAGTATCCATATAGCACAAAACTAATAAGAAATCAGTTTGAAAAACAAAACAAATTTAATAAAAG
Seq C2 exon
GTCAGTGTGAACCAATTACTCTGGAACTCTGTATGAACTTGCCTTACAACTACACTAGTTACCCAAACTACCTGGGGCACAGGACTCAGAAAGAAGCTTCTGTCAGTTGGGAGTCTTCTCTCTTCCCAGCCTTGGTTCAGACCAACTGCTACAAGTACCTTATGTTTTTCGCCTGTACAGTCTTAGTACCAAAATGTGACCCCCATACAAATCAACGGATCCCACCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014144_MULTIEX1-3/5=2-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139217=Fz=PU(64.1=96.2)
Main Inclusion Isoform:
ENSGALT00000022884fB6409
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGGTTTCCATGACCTTT
R:
ACTTGTAGCAGTTGGTCTGAACC
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]