GgaEX1020171 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10083966-10084705:+
Coord C1 exon
chr18:10083966-10084093
Coord A exon
chr18:10084204-10084352
Coord C2 exon
chr18:10084423-10084705
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGACAAGCCACTTCCCCCAGGTC
3' ss Score
4.99
5' ss Seq
CCCGTGAGC
5' ss Score
3.59
Exon sequences
Seq C1 exon
GTCTGTTTTCTTCAACGATGCGTGACCTGGCCAACATCACACACAAGGGGCCCAAGTGGATCATCCTCGATGGTGATATTGACCCCATGTGGATCGAGTCCCTGAACACGGTCATGGATGACAATAAG
Seq A exon
GTCCTCACCTTGGCCAGCAATGAGCGCATCCCCCTCAACCCCACCATGCGGCTGCTCTTTGAGATCAGCCACCTGCGCACCGCCACGCCAGCCACCGTGTCCCGGGCAGGGATCCTCTACATCAACCCCGCAGACCTGGGCTGGAACCC
Seq C2 exon
TGTGGTGACCAGTTGGATCGAGAAGAGGGCCGTGCAGTCTGAGAAGGCCAATCTGACGATCCTGTTCGACAAGTACGTGCCCGTGTGCCTGGAGAAGCTCAAGTTTGGCTTCAAGAAGATCACCCCCATCCCTGAGATCACGGTGATACAGATGATCCTGTACCTGCTGGAGTGCCTTCTGACACCACAGAACGTGCCACCGGACTCTCCCCGTGAGCTCTATGAGCTCTTCTTTGTCTTTGCGTGCATCTGGGCCTTTGGCGGGGCCATGTTCCAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'47-49,'47-48,48-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
PF077289=AAA_5=PD(25.5=70.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAACGATGCGTGACCTG
R:
CAGGGATGGGGGTGATCTTCT
Band lengths:
254-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]