RnoEX6050799 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107087737-107088770:-
Coord C1 exon
chr10:107088643-107088770
Coord A exon
chr10:107087821-107087969
Coord C2 exon
chr10:107087737-107087752
Length
149 bp
Sequences
Splice sites
3' ss Seq
GCTTGCTTCGTCCTCCCTAGGTC
3' ss Score
11.09
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCCTGTTCTCAACCATCATGCGGGACCTGGCCAACATCACGCACGACGGGCCCAAGTGGATTGTCCTGGATGGAGACATAGACCCCATGTGGATTGAGTCTCTCAACACAGTCATGGATGACAACAAG
Seq A exon
GTCCTCACCCTGGCCAGCAATGAGCGGATTCCCTTGAATCGCACCATGAGGCTGGTGTTTGAGATCAGTCACCTAAGGACAGCCACCCCGGCCACCGTCTCTAGGGCCGGCATACTCTACATTAACCCTGCCGATCTGGGATGGAACCC
Seq C2 exon
GGTGGTATATGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'45-50,'45-48,46-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
PF077289=AAA_5=PD(25.5=70.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]