GgaEX1020771 @ galGal4
Exon Skipping
Gene
ENSGALG00000007786 | DOK5
Description
docking protein 5 [Source:HGNC Symbol;Acc:HGNC:16173]
Coordinates
chr20:12608287-12613056:-
Coord C1 exon
chr20:12612955-12613056
Coord A exon
chr20:12610658-12610735
Coord C2 exon
chr20:12608287-12608401
Length
78 bp
Sequences
Splice sites
3' ss Seq
CATCCTTCTCATCTTTCCAGCAG
3' ss Score
9.22
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
ATCTTGTGTCATGAATGGAGCTGGGATGGGATGACTGTGCTGTATTTACCAGTGAATATCCCCTGGTGGGACTGCGATGTTCCGCCTACAGCCCTCTGCTGG
Seq A exon
CAGTGCTTTGAACATCCGTTCCGTCTGGCCCGGAGGCGCATGACTCAGTCTGAACACAAGTCATTAGTGGTACTGCTG
Seq C2 exon
GTCACAGAGCTCAATAATGTGAAGAATATATCACGAATGCCGAAGAGCACAAAGAAGCATGCTGTTGGGATTTATTTTAATGATGACACCTCTAAAACTTTTGCTTGTGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007786_MULTIEX1-3/9=2-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(23.9=100)
A:
PF0016924=PH=FE(19.2=100)
C2:
PF0016924=PH=FE(36.5=100)
Main Inclusion Isoform:
ENSGALT00000012627fB6924
Main Skipping Isoform:
ENSGALT00000012627fB6923
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCATGAATGGAGCTGGG
R:
TCCCAACAGCATGCTTCTTTGT
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]