Special

GgaEX1023476 @ galGal4

Exon Skipping

Description
eyes shut homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:21555]
Coordinates
chr3:84849971-84899616:+
Coord C1 exon
chr3:84849971-84850124
Coord A exon
chr3:84894754-84894862
Coord C2 exon
chr3:84899396-84899616
Length
109 bp
Sequences
Splice sites
3' ss Seq
GATCCTCTGTTTCCTTCTAGCTA
3' ss Score
9.73
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTAGTGAAAAGAATTTTGGAGAACAGTTTCTTCACTTATATCTTGTGGAGGGAAGACCAACAGTTCGATTCAGTTGTGGAAACTCTCAGAACATTCTGACTGTATCTGGCAATCAAACCATTAGCAAGGGAATATTCATCCCTATCATAATAAG
Seq A exon
CTATATGTTGCCTGTTAGCAGTCTTGAAGGTTACTGCATGATTGAAATGGCTGCAGACAGAAATCCTCCCGTACAACACAGACTCCATCTCTCATATCAGGCATCTCAG
Seq C2 exon
ATCACCTTTGGATCAACCTTTCTTGGGAATGTTCCTGTTCACAAAGAGGTTCCTGAATGTGCTGGGCAGATACGTGGCTATAAAGGATGCATTAGGGATTTTCAAGTAAACAACAAAGAATTGTTCATCATAGATGATGCTCTTGGAGGGAGGAATGTTGAGAACTGTAATGTTCCAATATGTGATTACCATCCCTGTCGCAATGGTGGAACCTGCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016263-'5-23,'5-20,10-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.190 C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
PF0221019=Laminin_G_2=PU(32.2=90.5)
C2:
PF0221019=Laminin_G_2=PD(64.4=51.4),PF0000822=EGF=PU(41.9=17.6)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATCAAACCATTAGCAAGGG
R:
ACCATTGCGACAGGGATGGTA
Band lengths:
254-363
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]