HsaEX6047984 @ hg38
Exon Skipping
Gene
ENSG00000188107 | EYS
Description
eyes shut homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:21555]
Coordinates
chr6:63984383-64000269:-
Coord C1 exon
chr6:64000169-64000269
Coord A exon
chr6:63999075-63999183
Coord C2 exon
chr6:63984383-63984603
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTGTTTTACGTTTAGCTA
3' ss Score
7.38
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CCGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Seq A exon
CTACACAACGCCTGTTGGCAGCCCTGGAGTTGTTTGTATGATTGAAATGACTGCAGATGGAAAACCTCCAGTACAGAAGAAAGACACAGAGATTTCCCATGCCTCTCAG
Seq C2 exon
GCATATTTTGAATCAATGTTCCTTGGCCATATTCCTGCAAATGTTCAAATTCATAAGAAAGCAGGTCCTGTTTATGGGTTCAGGGGCTGCATTCTAGACCTTCAAGTAAACAACAAAGAATTCTTCATCATCGATGAAGCACGACATGGAAAGAATATTGAGAACTGCCACGTCCCTTGGTGTGCTCATCATCTGTGCCGCAACAATGGCACCTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188107-'96-115,'96-114,97-115
Average complexity
C3
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0221019=Laminin_G_2=FE(25.9=100)
C2:
PF0221019=Laminin_G_2=PD(27.3=51.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGACAGAGCGAGACTC
R:
ATGATGAGCACACCAAGGGAC
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains