GgaEX1024573 @ galGal3
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
NA
Coordinates
chr10:11683968-11685191:-
Coord C1 exon
chr10:11685066-11685191
Coord A exon
chr10:11684735-11684857
Coord C2 exon
chr10:11683968-11684084
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTGGTTTTGCTTATTTTAGATC
3' ss Score
9.02
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATATTGATGAGTGCAAGGTTATCCACGATGTCTGCCGTAATGGGGAATGCATCAATGAAAGGGGATCTTACCGTTGTCACTGCAATCTTGGCTATACTACAGATATAACTGGCACTCTTTGCATAG
Seq A exon
ATCTGAATGAATGTAATGAGTCCCCCAAACCTTGCAATTTCATCTGCAAAAACACAGAAGGGAGCTTCCAGTGCTCATGTCCGAAAGGGTACATCCTTCAAGAAGATGGGAGAAGCTGCAAAG
Seq C2 exon
ATCTCGATGAATGTGCAACAAAGCAGCACAACTGTCAGTTCCTTTGTGTCAACACTATTGGGGGTTTTACTTGTAAATGTCCTCCTGGATTCACTCAGCACCATACAGCCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960-'64-69,'64-68,65-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGATGAGTGCAAGGTTATCCACG
R:
CAATGCAGGCTGTATGGTGCT
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]