DreEX0004237 @ danRer10
Exon Skipping
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4076519-4079578:-
Coord C1 exon
chr22:4079453-4079578
Coord A exon
chr22:4077251-4077373
Coord C2 exon
chr22:4076519-4076635
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTCAAACGCTTTCTCTTTAGATA
3' ss Score
7.91
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ATATCAACGAGTGTGAGGTGATGCCCAACCTGTGTAAGAATGGCCAGTGCATCAACAGTGTGGGCTCTTTCCGCTGCCACTGCAATGTTGGGTACACCAATGACTTCACCGGCACCTCCTGCATTG
Seq A exon
ATATGGACGAATGCTCTCAGTCGCCCAAACCGTGTAACTTCCTGTGCAAGAACACTGAAGGCAGCTACCTGTGCTCCTGTCCCAGAGGATACATCCTACAGCCGGATGGCAAGACCTGCAAAG
Seq C2 exon
ATTTGGACGAGTGCTCAACCAAGCAGCACAACTGTCAGTTCCTGTGCGTCAACACGATCGGTGGTTTCACCTGTAAATGCCCCTCGGGCTTCACACAGCACCAGACGGCCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237-'41-41,'41-40,42-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAACGAGTGTGAGGTGATGC
R:
CTATGCAGGCCGTCTGGTG
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]