RnoEX0035160 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53079524-53083245:-
Coord C1 exon
chr18:53083120-53083245
Coord A exon
chr18:53081468-53081590
Coord C2 exon
chr18:53079524-53079640
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTGGTCTTTCCTCTCTGTAGACC
3' ss Score
10.11
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATATTGACGAATGTAAGGTGATGCCAAGCCTCTGTACTAATGGCCAGTGTGTCAACACCATGGGCTCCTTCCGGTGCTTCTGCAAGGTTGGCTACACCACAGACATCAGCGGGACAGCTTGTGTAG
Seq A exon
ACCTGGATGAATGTTCCCAGTCTCCAAAACCATGCAACTTCATCTGCAAGAACACCGAGGGCAGTTACCAGTGCTCCTGCCCACGGGGTTACGTCCTGCAGGAAGACGGCAAGACGTGCAAAG
Seq C2 exon
ACCTCGATGAATGTCAAACCAAACAGCACAACTGCCAGTTCCTCTGTGTCAACACCCTGGGGGGGTTCACCTGTAAATGTCCACCCGGTTTCACCCAGCATCACACGGCTTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219-'53-58,'53-57,54-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGACGAATGTAAGGTGATGCCA
R:
CAATGCAAGCCGTGTGATGC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]