GgaEX1024616 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:362245-364021:+
Coord C1 exon
chr28:362245-362370
Coord A exon
chr28:363426-363548
Coord C2 exon
chr28:363905-364021
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCTTTGCCTCTCAATTCCAGATC
3' ss Score
9.9
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
ACATTGATGAGTGCAAGGTTCTGCCCAACCTCTGCAAGAACGGACAGTGCATCAACAGCATTGGCTCCTTCCGCTGCCACTGCAGGCTGGGCTACACAGCAGATATCACAGGCACAGCCTGTGTGG
Seq A exon
ATCTGGATGAGTGTAACCAGTCCCCTAAACCATGCAACTTCATCTGCAAGAACACAGAGGGCAGCTACCAGTGCTCGTGCCCACGAGGATATGTTCTGCAAGAAGACGGGAAGATTTGCAAAG
Seq C2 exon
ACTTGGACGAATGTTCCACCAAGCAGCACAACTGCCAGTTCCTGTGTGTGAACGTTATTGGAGGATTCAACTGCAAATGCCCTCCAGGCTTCACTCAGCACCACTCATCCTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'60-67,'60-66,61-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGATGAGTGCAAGGTTCTGC
R:
CGATGCAGGATGAGTGGTGC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]