GgaEX6050696 @ galGal3
Exon Skipping
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55657019-55658126:-
Coord C1 exon
chrZ:55658001-55658126
Coord A exon
chrZ:55657285-55657407
Coord C2 exon
chrZ:55657019-55657135
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTAACAGTTTCTCTCTTTAGATC
3' ss Score
9.79
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATATTGATGAATGTAAGGTCATGCCAAACCTTTGTAGACATGGACAATGTATCAACACTATGGGCTCATTCCGCTGCTTTTGCAAAGTTGGCTATACAACTGACATAAGCAGCACATCTTGTGTGG
Seq A exon
ATCTGGATGAATGCTCGCAGTCTCCTAAACCATGCAATTTTATCTGCAAGAATTCAGAAGGGAGCTATCAATGCTCATGTCCCCGAGGCTACATCCTTCAGGAAGATGGGAAGACGTGTAAAG
Seq C2 exon
ATCTTGATGAATGTCAAACTAAACAACACAATTGTCAGTTTCTCTGTGTCAACACCCTTGGAGGCTTCACATGCAAATGTCCACCTGGTTTTACTCAACATCACACAGCTTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'69-72,'69-71,70-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGATGAATGTAAGGTCATGCCA
R:
CAATACAAGCTGTGTGATGTTGAGT
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]