GgaEX1024589 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:343123-344757:+
Coord C1 exon
chr28:343123-343248
Coord A exon
chr28:344148-344273
Coord C2 exon
chr28:344635-344757
Length
126 bp
Sequences
Splice sites
3' ss Seq
AAATGTTCTCTCCACCACAGATA
3' ss Score
8.52
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ATATCAATGAGTGTGAGCGAGACCCACTGCTGTGCCGAGGTGGGATCTGCATGAACACTGATGGCAGCTTTGAATGCATCTGCCCCCCTGGACATGAGCTGACTTCAGAAGGGAACACTTGCATAG
Seq A exon
ATATCAATGAATGCTCCCTCAGTGACAACCTGTGTCGCAACGGACGCTGCGTCAATGTCATTGGGACCTACCAGTGTGCGTGTGATCCGGGCTTCCAGGCCACACCAGACAGGCAGGGCTGTGTCG
Seq C2 exon
ACATTGATGAGTGCACCATAACCAATGGTGGCTGTGACACACACTGCTCCAACTCGGAGGGCAGCTATGAGTGCAGCTGCAGTGAAGGCTATGCACTGATGCCGGACAAGAGATCATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'28-35,'28-34,29-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGAGTGTGAGCGAGACCC
R:
CACATGATCTCTTGTCCGGCA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]