DreEX6097159 @ danRer10
Exon Skipping
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4107204-4109193:-
Coord C1 exon
chr22:4109068-4109193
Coord A exon
chr22:4108727-4108852
Coord C2 exon
chr22:4107204-4107326
Length
126 bp
Sequences
Splice sites
3' ss Seq
GACTGATTTCTCTCTATCAGATG
3' ss Score
8.87
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
ACATTGACGAGTGCGAGCGTGACCCACTGCTGTGCCGTGGAGGGACGTGTCTGAACACTGAGGGCAGCTACGAGTGCGACTGTCCTCCAGGACACCAGCTCAGTACTGAGGCCTCTGCTTGTGAAG
Seq A exon
ATGTGAACGAGTGTCAGCTGAGTGACAATCTGTGTAAACACGGTCAGTGTGTGAACATGGTGGGAACATACCAGTGCTCATGTGAAACGGGATACCAGGTGACGCCCGACAGACAGGGCTGTGTGG
Seq C2 exon
ATATCGACGAGTGCACCATCATGAACGGCGGCTGCGACACACACTGCACAAACTCGGAGGGAAGCTACGAATGCAGCTGCAGCGAAGGATACGCGCTCATGCCTGACCTCAGGACCTGCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACGAGTGCGAGCGTG
R:
AGCGCAGGTCCTGAGGTC
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]