Special

GgaEX6050688 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chrZ:55698318-55699823:-
Coord C1 exon
chrZ:55699698-55699823
Coord A exon
chrZ:55698782-55698907
Coord C2 exon
chrZ:55698318-55698440
Length
126 bp
Sequences
Splice sites
3' ss Seq
AATAAACACTTCTTTTCCAGATG
3' ss Score
7.95
5' ss Seq
TAGGCAAGT
5' ss Score
1.91
Exon sequences
Seq C1 exon
ATATTGATGAATGCGAACGCAACCCTCTGCTATGTAGAGGTGGCATGTGTGTGAACACAGAAGGGAGTTTTCAGTGTGACTGTCCTGTGGGACATGAACTGTCACCATCACGTGAGGAATGCATTG
Seq A exon
ATGTAAATGAATGCTCACTAAGTGACAATCTCTGCAGAAATGGCAACTGTGTGAACATGGTTGGAACATACCAGTGTTCCTGTAACTCTGGATACCAAGCCACGGCTGACAGACAAGGCTGCGTAG
Seq C2 exon
ATATTGATGAATGTATGATAATGAATGGTGGCTGTGACACCCACTGCACCAACTCAGAGGGCAGCTACGAATGTAGCTGCAGTGATGGTTATGCTCTAATGCCAGATGTCAGGACGTGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'34-39,'34-38,35-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGCAACCCTCTGCTATGT
R:
CGCACACGTCCTGACATCTG
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]