BtaEX6039525 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26856635-26859551:+
Coord C1 exon
chr7:26856635-26856760
Coord A exon
chr7:26858845-26858970
Coord C2 exon
chr7:26859429-26859551
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTATCTTTTTACAGATA
3' ss Score
11.32
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACATTGACGAATGTGAACGTAACCCTCTCCTTTGTAGGGGTGGCACCTGTGTGAACACTGAGGGCAGCTTTCAGTGTGACTGCCCACTGGGACACGAGCTGTCACCATCACGTGAGGACTGTGTGG
Seq A exon
ATATTAATGAATGCTCTCTGAGTGACAATTTATGTAGAAATGGGAAATGCGTAAACATGATTGGAACTTATCAGTGCTCCTGCAATCCTGGGTACCAGGCCACGCCAGATCGGCAGGGCTGTACAG
Seq C2 exon
ATATTGATGAGTGCATGATAATGAATGGAGGCTGTGACACGCAGTGCACTAATGCAGAAGGAAGCTATGAATGTAGCTGCAGTGAAGGGTATGCCCTGATGCCCGATGGGAGGTCATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'64-64,'64-63,65-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAATGTGAACGTAACCCT
R:
CTGCACATGACCTCCCATCG
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]