GgaEX1024599 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:349136-350249:+
Coord C1 exon
chr28:349136-349297
Coord A exon
chr28:349802-349870
Coord C2 exon
chr28:350124-350249
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTGACTGACTTTTCCTACAGCCG
3' ss Score
8.94
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATACCCGTGTTGGGAACTGCTTCCTGGACACCCAGGATCGTGGAGATGGGGGGATCTCCTGCAGTGCAGAAATTGGAGTTGGTGTCACTCGGGCATCCTGCTGCTGCTCACTGGGTCGTGCATGGGGCAACCCCTGCGAGCTTTGTCCTCCAGCCAACACGA
Seq A exon
CCGAGTACAAGACCCTGTGCCCTGGAGGAGAAGGTTTCCGGCCCAACCCCATCACTGTCATCCTGGAAG
Seq C2 exon
ATATTGACGAGTGCCAGGAGCTGCCAGGTCTCTGCCAGGGCGGCAACTGTGTGAACACTTTTGGCAGCTTCCAGTGTGAGTGCCCCCTTGGCTACTACCTCAACGAGGACACCCGGATCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'38-45,'38-44,39-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(2.3=1.8),PF0068312=TB=PU(85.7=65.5)
A:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGGAACTGCTTCCTGGAC
R:
AGCTCCTGGCACTCGTCAATA
Band lengths:
176-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]