GgaEX1024602 @ galGal4
Exon Skipping
Gene
ENSGALG00000000327 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr28:377745-390813:+
Coord C1 exon
chr28:377745-377870
Coord A exon
chr28:378050-378199
Coord C2 exon
chr28:390694-390813
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTCTGGGCTGCCTTTGCAGACA
3' ss Score
8.24
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
ATATTGATGAGTGCTCTGCTCACATTGGGATCTGTGGCCCTGGGACCTGTTACAACACCCTTGGCAACTACACCTGTGTGTGCCCCCCCGAATATATGCAAGTCAATGGAGGAAACAACTGCATGG
Seq A exon
ACATGAGGAAGAGCGTGTGCTATCGTAACTACAATGACACGTGTGAGAACGAGCTCTCCTTCAACATGACCAAGAAGATGTGCTGCTGCTCCTACAACATTGGCAAAGCCTGGAACAAACCGTGTGAGCCCTGCCCTACACCAGCTAGCC
Seq C2 exon
ATGTGGATGAGTGTGACGGAAACCACCGGTGCCAGCATGGCTGCCAGAACGTGCTTGGAGGCTACAGATGTGGCTGTCCACAGGGCTATGTGCAGCACTACCAGTGGAATCAGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327_MULTIEX2-34/54=33-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
PF0068312=TB=PU(86.4=74.5)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGTGCTCTGCTCACA
R:
CCACACACTGATTCCACTGGT
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]